Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Cellular Amino Acid Metabolic Process (GO:0006520) Genes Targeted by hsa-mir-9 in IDC Breast Radvanyi Cluster 16 Table contains all genes in the IDC Breast Radvanyi cluster number 16. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-9 GO:0006520 159 ADSS adenylosuccinate synthase [Source:HGNC Symbol;Acc:292] zzz999 1777 DNASE2 deoxyribonuclease II, lysosomal [Source:HGNC Symbol;Acc:2960] zzz999 130589 GALM galactose mutarotase (aldose 1-epimerase) [Source:HGNC Symbol;Acc:24063] zzz999 23012 STK38L serine/threonine kinase 38 like [Source:HGNC Symbol;Acc:17848] P T 90736 FAM104B family with sequence similarity 104, member B [Source:HGNC Symbol;Acc:25085] zzz999 24145 PANX1 pannexin 1 [Source:HGNC Symbol;Acc:8599] zzz999 488 ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 [Source:HGNC Symbol;Acc:812] zzz999 3301 DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] zzz999 7411 VBP1 von Hippel-Lindau binding protein 1 [Source:HGNC Symbol;Acc:12662] zzz999 25921 ZDHHC5 zinc finger, DHHC-type containing 5 [Source:HGNC Symbol;Acc:18472] P T 58472 SQRDL sulfide quinone reductase-like (yeast) [Source:HGNC Symbol;Acc:20390] zzz999 11321 GPN1 GPN-loop GTPase 1 [Source:HGNC Symbol;Acc:17030] zzz999 79031 PDCL3 phosducin-like 3 [Source:HGNC Symbol;Acc:28860] zzz999 4141 MARS methionyl-tRNA synthetase [Source:HGNC Symbol;Acc:6898] zzz999 Yes 5692 PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 [Source:HGNC Symbol;Acc:9541] zzz999 Yes 8766 RAB11A RAB11A, member RAS oncogene family [Source:HGNC Symbol;Acc:9760] zzz999 340277 C7orf46 chromosome 7 open reading frame 46 [Source:HGNC Symbol;Acc:27977] zzz999 1175 AP2S1 adaptor-related protein complex 2, sigma 1 subunit [Source:HGNC Symbol;Acc:565] zzz999 10102 TSFM Ts translation elongation factor, mitochondrial [Source:HGNC Symbol;Acc:12367] zzz999 8560 DEGS1 degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) [Source:HGNC Symbol;Acc:13709] zzz999 7295 TXN thioredoxin [Source:HGNC Symbol;Acc:12435] zzz999 4731 NDUFV3 NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa [Source:HGNC Symbol;Acc:7719] zzz999 133383 C5orf35 chromosome 5 open reading frame 35 [Source:HGNC Symbol;Acc:28508] zzz999 56902 PNO1 partner of NOB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:32790] zzz999 10857 PGRMC1 progesterone receptor membrane component 1 [Source:HGNC Symbol;Acc:16090] T 83894 TTC29 tetratricopeptide repeat domain 29 [Source:HGNC Symbol;Acc:29936] zzz999 64841 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 [Source:HGNC Symbol;Acc:19980] P T 3608 ILF2 interleukin enhancer binding factor 2, 45kDa [Source:HGNC Symbol;Acc:6037] zzz999 7705 ZNF146 zinc finger protein 146 [Source:HGNC Symbol;Acc:12931] zzz999 84792 C7orf70 chromosome 7 open reading frame 70 [Source:HGNC Symbol;Acc:22422] zzz999 6652 SORD sorbitol dehydrogenase [Source:HGNC Symbol;Acc:11184] zzz999 6282 S100A11 S100 calcium binding protein A11 [Source:HGNC Symbol;Acc:10488] zzz999 9830 TRIM14 tripartite motif containing 14 [Source:HGNC Symbol;Acc:16283] T 6873 TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa [Source:HGNC Symbol;Acc:11536] zzz999 9793 CKAP5 cytoskeleton associated protein 5 [Source:HGNC Symbol;Acc:28959] zzz999 55227 LRRC1 leucine rich repeat containing 1 [Source:HGNC Symbol;Acc:14307] P T 5034 P4HB prolyl 4-hydroxylase, beta polypeptide [Source:HGNC Symbol;Acc:8548] zzz999 Yes 139596 UPRT uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28334] zzz999 1317 SLC31A1 solute carrier family 31 (copper transporters), member 1 [Source:HGNC Symbol;Acc:11016] zzz999 65108 MARCKSL1 MARCKS-like 1 [Source:HGNC Symbol;Acc:7142] zzz999 5707 PSMD1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 [Source:HGNC Symbol;Acc:9554] zzz999 Yes 11260 XPOT exportin, tRNA (nuclear export receptor for tRNAs) [Source:HGNC Symbol;Acc:12826] zzz999 79837 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma [Source:HGNC Symbol;Acc:23786] T 54808 DYM dymeclin [Source:HGNC Symbol;Acc:21317] zzz999 10094 ARPC3 actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] zzz999 6888 TALDO1 transaldolase 1 [Source:HGNC Symbol;Acc:11559] zzz999 79020 C7orf25 chromosome 7 open reading frame 25 [Source:HGNC Symbol;Acc:21703] P T 5718 PSMD12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 [Source:HGNC Symbol;Acc:9557] zzz999 Yes 3015 H2AFZ H2A histone family, member Z [Source:HGNC Symbol;Acc:4741] zzz999 22928 zzz999 zzz999 T Yes 4860 PNP purine nucleoside phosphorylase [Source:HGNC Symbol;Acc:7892] zzz999 5685 PSMA4 proteasome (prosome, macropain) subunit, alpha type, 4 [Source:HGNC Symbol;Acc:9533] zzz999 Yes 4702 NDUFA8 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa [Source:HGNC Symbol;Acc:7692] zzz999 81892 C14orf156 chromosome 14 open reading frame 156 [Source:HGNC Symbol;Acc:20495] zzz999 57532 NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 [Source:HGNC Symbol;Acc:17634] zzz999 100287932 TIMM23 translocase of inner mitochondrial membrane 23 homolog (yeast) [Source:HGNC Symbol;Acc:17312] T 10553 HTATIP2 HIV-1 Tat interactive protein 2, 30kDa [Source:HGNC Symbol;Acc:16637] zzz999 Yes 6548 SLC9A1 solute carrier family 9 (sodium/hydrogen exchanger), member 1 [Source:HGNC Symbol;Acc:11071] T 84905 ZNF341 zinc finger protein 341 [Source:HGNC Symbol;Acc:15992] zzz999 5050 PAFAH1B3 platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) [Source:HGNC Symbol;Acc:8576] zzz999 5106 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) [Source:HGNC Symbol;Acc:8725] zzz999 25917 THUMPD3 THUMP domain containing 3 [Source:HGNC Symbol;Acc:24493] zzz999 5687 PSMA6 proteasome (prosome, macropain) subunit, alpha type, 6 [Source:HGNC Symbol;Acc:9535] zzz999 Yes 6845 VAMP7 vesicle-associated membrane protein 7 [Source:HGNC Symbol;Acc:11486] T 57826 RAP2C RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:21165] P T 91452 ACBD5 acyl-CoA binding domain containing 5 [Source:HGNC Symbol;Acc:23338] zzz999 5355 PLP2 proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087] zzz999 6637 SNRPG small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163] zzz999 23480 SEC61G Sec61 gamma subunit [Source:HGNC Symbol;Acc:18277] zzz999 2271 FH fumarate hydratase [Source:HGNC Symbol;Acc:3700] zzz999 11177 BAZ1A bromodomain adjacent to zinc finger domain, 1A [Source:HGNC Symbol;Acc:960] zzz999 5062 PAK2 p21 protein (Cdc42/Rac)-activated kinase 2 [Source:HGNC Symbol;Acc:8591] P T 6613 SUMO2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:11125] zzz999 5433 POLR2D polymerase (RNA) II (DNA directed) polypeptide D [Source:HGNC Symbol;Acc:9191] P T 6634 SNRPD3 Small nuclear ribonucleoprotein Sm D3 [Source:UniProtKB/Swiss-Prot;Acc:P62318] zzz999 5704 PSMC4 proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Source:HGNC Symbol;Acc:9551] zzz999 Yes 5202 PFDN2 prefoldin subunit 2 [Source:HGNC Symbol;Acc:8867] zzz999 10440 TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315] zzz999 8634 RTCD1 RNA terminal phosphate cyclase domain 1 [Source:HGNC Symbol;Acc:17981] zzz999 1347 COX7A2 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) [Source:HGNC Symbol;Acc:2288] zzz999 10419 PRMT5 protein arginine methyltransferase 5 [Source:HGNC Symbol;Acc:10894] zzz999 90427 BMF Bcl2 modifying factor [Source:HGNC Symbol;Acc:24132] zzz999 64979 MRPL36 mitochondrial ribosomal protein L36 [Source:HGNC Symbol;Acc:14490] zzz999 2058 EPRS glutamyl-prolyl-tRNA synthetase [Source:HGNC Symbol;Acc:3418] zzz999 Yes 4615 MYD88 myeloid differentiation primary response gene (88) [Source:HGNC Symbol;Acc:7562] zzz999 8099 CDK2AP1 cyclin-dependent kinase 2 associated protein 1 [Source:HGNC Symbol;Acc:14002] zzz999 55585 UBE2Q1 ubiquitin-conjugating enzyme E2Q family member 1 [Source:HGNC Symbol;Acc:15698] P T 51527 C14orf129 chromosome 14 open reading frame 129 [Source:HGNC Symbol;Acc:20343] P T 11222 MRPL3 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:10379] zzz999 6675 UAP1 UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457] zzz999 54915 YTHDF1 YTH domain family, member 1 [Source:HGNC Symbol;Acc:15867] zzz999 55967 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Source:HGNC Symbol;Acc:23987] zzz999 10190 TXNDC9 thioredoxin domain containing 9 [Source:HGNC Symbol;Acc:24110] zzz999 4126 MANBA mannosidase, beta A, lysosomal [Source:HGNC Symbol;Acc:6831] zzz999 58478 ENOPH1 enolase-phosphatase 1 [Source:HGNC Symbol;Acc:24599] zzz999 Yes 6102 RP2 retinitis pigmentosa 2 (X-linked recessive) [Source:HGNC Symbol;Acc:10274] P T 51765 zzz999 Serine/threonine-protein kinase MST4 [Source:UniProtKB/Swiss-Prot;Acc:Q9P289] zzz999 515 ATP5F1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 [Source:HGNC Symbol;Acc:840] zzz999 4734 NEDD4 neural precursor cell expressed, developmentally down-regulated 4 [Source:HGNC Symbol;Acc:7727] P T 51373 MRPS17 mitochondrial ribosomal protein S17 [Source:HGNC Symbol;Acc:14047] zzz999 2048 EPHB2 EPH receptor B2 [Source:HGNC Symbol;Acc:3393] T 3336 HSPE1 heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269] zzz999

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